# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
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#
# If you are reading this file be aware that the original Cargo.toml
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# See Cargo.toml.orig for the original contents.

[package]
edition = "2021"
name = "viguno"
version = "0.3.2"
authors = ["Manuel Holtgrewe <manuel.holtgrewe@bih-charite.de>"]
description = "Phenotype/disease for VarFish"
readme = "README.md"
license = "Apache-2.0"
repository = "https://github.com/varfish-org/viguno"

[[bin]]
name = "viguno"
path = "src/main.rs"

[dependencies.actix-web]
version = "4.5"

[dependencies.anyhow]
version = "1.0"

[dependencies.clap]
version = "4.5"
features = [
    "derive",
    "help",
    "env",
]

[dependencies.clap-verbosity-flag]
version = "2.1"

[dependencies.console]
version = "0.15"

[dependencies.csv]
version = "1.3"

[dependencies.derive_more]
version = "0.99"

[dependencies.env_logger]
version = "0.10"

[dependencies.fastobo]
version = "0.15.2"

[dependencies.fastrand]
version = "2.0"

[dependencies.flate2]
version = "1.0"

[dependencies.hpo]
version = "0.8"

[dependencies.indexmap]
version = "2.2"
features = ["serde"]

[dependencies.indicatif]
version = "0.17"
features = ["rayon"]

[dependencies.itertools]
version = "0.12"

[dependencies.lazy_static]
version = "1.4"

[dependencies.log]
version = "0.4"

[dependencies.once_cell]
version = "1.18"

[dependencies.prost]
version = "0.12"

[dependencies.rayon]
version = "1.8"

[dependencies.regex]
version = "1.10"

[dependencies.serde]
version = "1.0"
features = ["serde_derive"]

[dependencies.serde_json]
version = "1.0"

[dependencies.serde_with]
version = "3.6"
features = [
    "alloc",
    "macros",
    "indexmap_2",
]
default-features = false

[dependencies.shellexpand]
version = "3.0"

[dependencies.strum]
version = "0.26"
features = [
    "strum_macros",
    "derive",
]

[dependencies.strum_macros]
version = "0.26"

[dependencies.tantivy]
version = "0.21.1"

[dependencies.tempdir]
version = "0.3.7"

[dependencies.thiserror]
version = "1.0"

[dependencies.tracing]
version = "0.1"

[dependencies.tracing-subscriber]
version = "0.3"

[dependencies.utoipa]
version = "4.2"
features = [
    "actix_extras",
    "chrono",
    "indexmap",
    "preserve_order",
    "yaml",
]

[dependencies.utoipa-swagger-ui]
version = "7.1.0"
features = ["actix-web"]

[dev-dependencies.file_diff]
version = "1.0"

[dev-dependencies.insta]
version = "1.34"
features = ["yaml"]

[dev-dependencies.rstest]
version = "0.21"

[dev-dependencies.serde_test]
version = "1.0"

[dev-dependencies.temp_testdir]
version = "0.2"

[build-dependencies.anyhow]
version = "1.0"

[build-dependencies.prost-build]
version = "0.12"