#@ except: MatchingParameterMeta, MissingRequirements

version 1.2

task foo {
    meta {
        description: "test for key-value pairs"
        another_key: ["value1",
        "value2", "value3",]
        more_key: {d: "a",
            e: "b",}
        complex_key: {
            a: {b: "c",
                d: "e",},
            f: {
                g: "h",
                i: "j",
                },
            k: ["l",
                "m", "n",],
            o: ["p",
                "q",
                "r",
        ],
        }
    }

    parameter_meta {
        bam: "Input BAM format file to generate coverage for"
        gtf: "Input genomic features in gzipped GTF format to count reads for"
        strandedness: {
            description: "Strandedness protocol of the RNA-Seq experiment",
            external_help: "https://htseq.readthedocs.io/en/latest/htseqcount.html#cmdoption-htseq-count-s",
            choices: ["yes", "reverse", "no",]
        }
        minaqual: {description: "Skip all reads with alignment quality lower than the given minimum value", common: true,}
        modify_memory_gb: "Add to or subtract from dynamic memory allocation. Default memory is determined by the size of the inputs. Specified in GB."
        modify_disk_size_gb: "Add to or subtract from dynamic disk space allocation. Default disk size is determined by the size of the inputs. Specified in GB."
   }

   command <<< >>>

   output {}

   runtime {}
}