"""Submit jobs to Sun Grid Engine.""" # pylint: disable=invalid-name from __future__ import absolute_import import os import subprocess from . import tracker def submit(args): """Job submission script for SGE.""" if args.jobname is None: args.jobname = ('dmlc%d.' % args.num_workers) + args.command[0].split('/')[-1] if args.sge_log_dir is None: args.sge_log_dir = args.jobname + '.log' if os.path.exists(args.sge_log_dir): if not os.path.isdir(args.sge_log_dir): raise RuntimeError('specified --sge-log-dir %s is not a dir' % args.sge_log_dir) else: os.mkdir(args.sge_log_dir) runscript = '%s/rundmlc.sh' % args.logdir fo = open(runscript, 'w') fo.write('source ~/.bashrc\n') fo.write('export DMLC_TASK_ID=${SGE_TASK_ID}\n') fo.write('export DMLC_JOB_CLUSTER=sge\n') fo.write('\"$@\"\n') fo.close() def sge_submit(nworker, nserver, pass_envs): """Internal submission function.""" env_arg = ','.join('%s=\"%s\"' % (k, str(v)) for k, v in pass_envs.items()) cmd = 'qsub -cwd -t 1-%d -S /bin/bash' % (nworker + nserver) if args.queue != 'default': cmd += '-q %s' % args.queue cmd += ' -N %s ' % args.jobname cmd += ' -e %s -o %s' % (args.logdir, args.logdir) cmd += ' -pe orte %d' % (args.vcores) cmd += ' -v %s,PATH=${PATH}:.' % env_arg cmd += ' %s %s' % (runscript, ' '.join(args.command)) print(cmd) subprocess.check_call(cmd, shell=True) print('Waiting for the jobs to get up...') # call submit, with nslave, the commands to run each job and submit function tracker.submit(args.num_workers, args.num_servers, fun_submit=sge_submit, pscmd=' '.join(args.command))