# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies
#
# If you believe there's an error in this file please file an
# issue against the rust-lang/cargo repository. If you're
# editing this file be aware that the upstream Cargo.toml
# will likely look very different (and much more reasonable)

[package]
edition = "2018"
name = "yacrd"
version = "0.6.2"
authors = ["Pierre Marijon <pierre.marijon@inria.fr>"]
exclude = ["image/*", "tests/*"]
description = "Using all-against-all read mapping, yacrd performs: computation of pile-up coverage for each read and detection of chimeras"
homepage = "https://github.com/natir/yacrd"
readme = "Readme.md"
keywords = ["bioinformatics", "chimera", "long-read", "scrubbing"]
license = "MIT"
repository = "https://github.com/natir/yacrd"
[profile.release]
opt-level = 3
lto = "thin"
panic = "abort"
overflow-checks = false
incremental = false

[[bin]]
name = "yacrd"
path = "src/main.rs"
[dependencies.anyhow]
version = "1"

[dependencies.bio]
version = "0.31"

[dependencies.clap]
version = "3.0.0-beta.1"

[dependencies.csv]
version = "1"

[dependencies.env_logger]
version = "0.7"

[dependencies.log]
version = "0.4"

[dependencies.niffler]
version = "2"

[dependencies.thiserror]
version = "1"
[dev-dependencies.tempfile]
version = "3.1"