asts

Crates.ioasts
lib.rsasts
version0.16.0
created_at2024-11-21 10:50:42.461831+00
updated_at2025-09-15 13:45:24.656616+00
descriptionasts
homepage
repositoryhttps://github.com/keithyin/asts
max_upload_size
id1456023
size190,241
kethyin (keithyin)

documentation

README

# sbr2smc.aligned.bam and it's corresponding .bam file will be generated
asts -q subreads.bam -t smc.bam -p sbr2smc.aligned

chagelog

0.9.2

  • Don't execute fallback alignment when the first stage alignment get enough aligned result.

0.9.1

  • reporter bug fix

0.9.0

  • reporter
  • gsmm2(0.20 -> 0.22)
  • identity_gap_compressed instead of identity_without_long_indel(10)

0.8.0

  • using hpc

  • default kmer/wins and fallback kmer/wins

0.7.1

  • length filter when add sbr to SubreadsAndSmc
  • log file

0.4.0

  • dw,cr,ar and qual from sbr.bam will dump the result bam
  • worked for smc reads that length < 200 && >200

0.3.0

  • add ch tag to bam record

0.2.1

  • worked

0.1.1

0.1.0

Commit count: 89

cargo fmt