bascet
| Crates.io | bascet |
| lib.rs | bascet |
| version | 0.4.0 |
| created_at | 2025-04-22 21:14:23.300861+00 |
| updated_at | 2025-04-22 21:14:23.300861+00 |
| description | Bascet is a tool to preprocess single-cell data, handling barcode detection, trimming, QC, and managing the execution of custom tools for each cell |
| homepage | https://henriksson-lab.github.io/zorn/ |
| repository | https://github.com/henriksson-lab/bascet |
| max_upload_size | |
| id | 1644651 |
| size | 14,901,417 |
Johan Henriksson (mahogny)
documentation
README
Bascet (Bacterial Single CEll Toolkit)
Bascet is a complete solution for single-cell analysis, with focus on microbial analysis. It is however design to also do RNA-seq, ATAC-seq (you-name-it), agnostic from the instrument used. It has also been designed to analyze large numbers of bulk samples in a manner analogous to single-cell analysis (i.e. with a focus on clustering and data-driven analysis).
Bascet is an advanced command-line tool aimed primarily to be used through the Zorn R library, which offers multi-node compute capability and ease of use.
Most users will prefer to use Zorn. For more information, follow this link: https://henriksson-lab.github.io/zorn/