bsxplorer-ci
| Crates.io | bsxplorer-ci |
| lib.rs | bsxplorer-ci |
| version | 0.2.1 |
| created_at | 2025-03-26 21:07:32.041848+00 |
| updated_at | 2025-05-28 11:30:40.246145+00 |
| description | A high-performance tool for bisulfite sequencing data analysis and DNA methylation research |
| homepage | |
| repository | https://github.com/shitohana/bsxplorer2 |
| max_upload_size | |
| id | 1607154 |
| size | 163,905 |
shitohana (shitohana)
documentation
README
This binary provides the command-line interface (bsxplorer) for the
BSXplorer2 suite of tools.
It serves as the user-facing application that leverages the high-performance
bsxplorer2 core library
to perform various tasks related to bisulfite sequencing data analysis and
management.
Key functionalities provided by the bsxplorer CLI include:
convert: Convert methylation data between different file formats (e.g., Bismark, CgMap, BedGraph, Coverage, BSX).dmr: Identify differentially methylated regions between two groups of samples using rigorous statistical testing and segmentation.dimred: Perform dimensionality reduction analysis to identify regions with high methylation variability across samples using changepoint detection.validate: Ensure the structural integrity and consistency of multiple BSX files before joint analysis.sort: Reorder genomic data within a BSX file based on chromosome order.
Installation
You can install bsxplorer CLI tool with:
cargo install --locked bsxplorer-ci
After installation, bsxplorer binary should become available.
Explore possible commands with
bsxplorer help