Crates.io | dotthz |
lib.rs | dotthz |
version | |
source | src |
created_at | 2024-11-14 16:38:48.063786+00 |
updated_at | 2025-02-21 15:31:05.451044+00 |
description | Crate to open and write dotThz files in rust. |
homepage | https://github.com/hacknus/dotthz-rs |
repository | https://github.com/hacknus/dotthz-rs |
max_upload_size | |
id | 1448014 |
Cargo.toml error: | TOML parse error at line 18, column 1 | 18 | autolib = false | ^^^^^^^ unknown field `autolib`, expected one of `name`, `version`, `edition`, `authors`, `description`, `readme`, `license`, `repository`, `homepage`, `documentation`, `build`, `resolver`, `links`, `default-run`, `default_dash_run`, `rust-version`, `rust_dash_version`, `rust_version`, `license-file`, `license_dash_file`, `license_file`, `licenseFile`, `license_capital_file`, `forced-target`, `forced_dash_target`, `autobins`, `autotests`, `autoexamples`, `autobenches`, `publish`, `metadata`, `keywords`, `categories`, `exclude`, `include` |
size | 0 |
This crate provides an easy way to interface with dotThz files in rust.
Load it in your cargo.toml
[dependencies]
dotthz-rs = "0.2.8"
and then use like specified in the following example:
use std::path::PathBuf;
use dotthz::{DotthzFile};
fn main() {
// Load data from the original file
let file_path = PathBuf::new("test_files/2_VariableTemperature.thz");
let file = DotthzFile::create(&file_path);
// Initialize test metadata
let meta_data = DotthzMetaData {
user: "Test User".to_string(),
email: "test@example.com".to_string(),
orcid: "0000-0001-2345-6789".to_string(),
institution: "Test Institute".to_string(),
description: "Test description".to_string(),
md: [("Thickness (mm)".to_string(), "0.52".to_string())]
.into_iter()
.collect(),
ds_description: vec!["ds1".to_string()],
version: "1.0".to_string(),
mode: "Test mode".to_string(),
instrument: "Test instrument".to_string(),
time: "12:34:56".to_string(),
date: "2024-11-08".to_string(),
};
// create a group with metadata
let mut original_dotthz = DotthzFile::create(&path)?;
let group_name = "Measurement".to_string();
original_dotthz.add_group(&group_name, &meta_data)?;
// write data
let dataset_name = "test_dataset".to_string();
let dataset_data: Array2<f32> = array![[1.0, 2.0], [3.0, 4.0], [3.0, 4.0]];
original_dotthz.add_dataset(&group_name, &dataset_name, dataset_data.view())?;
// data is now already saved to the file.
// Load data from the dotTHz file
let file = DotthzFile::open(&file_path)?;
for group in file
.get_groups()?
{
// Compare the original and copied metadata
let meta_data = file.get_meta_data(&group.name());
for dataset in group.get_datasets() {
// do stuff with the loaded dataset
// ...
}
let data = file.get_dataset(&group.name(), &dataset_name);
}
}
Use the hdf5-sys-static
feature to compile hdf5 and statically link it. This requires cmake
to be installed.
Use the serde
feature to derive Serialize
and Deserialize
for DotthzMetaData
.