fastq-count
| Crates.io | fastq-count |
| lib.rs | fastq-count |
| version | 0.1.0 |
| created_at | 2019-04-30 12:44:13.117876+00 |
| updated_at | 2019-04-30 12:44:13.117876+00 |
| description | Simple fastq read and base counter for paired data. |
| homepage | |
| repository | https://github.com/sndrtj/fastq-count/ |
| max_upload_size | |
| id | 131162 |
| size | 4,350 |
Sander Bollen (sndrtj)
documentation
README
fastq-count
Simple fastq read and base counter for paired data.
Usage
Running the counter is as simple as:
fastq-count r1.fq r2.fq
Fastq files may be gzip compressed. When they are, their filenames must end in
.gz.
fastq-count returns a simple json, with schema:
{
"reads": {"type": "integer"},
"bases": {"type": "integer"}
}
License
MIT