fffx

Crates.iofffx
lib.rsfffx
version0.1.3
sourcesrc
created_at2022-10-07 21:45:24.886025
updated_at2023-07-08 00:13:49.844861
descriptionAnother fasta/q/x file format parser. Well fuzzed.
homepage
repositoryhttps://github.com/jguhlin/fffx
max_upload_size
id683086
size29,862
Joseph Guhlin (jguhlin)

documentation

README

Yet another fasta/q/x parser

Well fuzzed though....

Benchmark

I don't know if this is correct or not, but it's fast enough. NOTE: This does not include I/O at all as that is outside the scope of this library (for now) and thus uniprot is included as a raw string in the binary.

Running benches/parse_fasta.rs (target/release/deps/parse_fasta-1e449f5527386a9a) 
Parse UniProt SwissProt FASTA File/parse_fasta 
  time: [54.788 ns 54.922 ns 55.069 ns] 
  thrpt: [4773329 GiB/s 4786111 GiB/s 4797786 GiB/s] 

Found 11 outliers among 100 measurements (11.00%)
  4 (4.00%) low mild 4 (4.00%) high mild
  3 (3.00%) high severe

Changelog

0.1.3

Pin bytelines to 2.2.2 to remove the tokio/futures dependency as it is not used here.

0.1.2

Change zlib-ng for flate2 to just zlib.

Commit count: 38

cargo fmt