Crates.io | fffx |
lib.rs | fffx |
version | 0.1.3 |
source | src |
created_at | 2022-10-07 21:45:24.886025 |
updated_at | 2023-07-08 00:13:49.844861 |
description | Another fasta/q/x file format parser. Well fuzzed. |
homepage | |
repository | https://github.com/jguhlin/fffx |
max_upload_size | |
id | 683086 |
size | 29,862 |
Well fuzzed though....
I don't know if this is correct or not, but it's fast enough. NOTE: This does not include I/O at all as that is outside the scope of this library (for now) and thus uniprot is included as a raw string in the binary.
Running benches/parse_fasta.rs (target/release/deps/parse_fasta-1e449f5527386a9a)
Parse UniProt SwissProt FASTA File/parse_fasta
time: [54.788 ns 54.922 ns 55.069 ns]
thrpt: [4773329 GiB/s 4786111 GiB/s 4797786 GiB/s]
Found 11 outliers among 100 measurements (11.00%)
4 (4.00%) low mild 4 (4.00%) high mild
3 (3.00%) high severe
Pin bytelines to 2.2.2 to remove the tokio/futures dependency as it is not used here.
Change zlib-ng for flate2 to just zlib.