hooty
| Crates.io | hooty |
| lib.rs | hooty |
| version | 0.1.0 |
| created_at | 2025-06-14 13:37:02.092976+00 |
| updated_at | 2025-06-14 13:37:02.092976+00 |
| description | Direct computing of K2P min-max distance matrix |
| homepage | https://princic-1837592.github.io/Hooty/ |
| repository | https://github.com/Princic-1837592/Hooty |
| max_upload_size | |
| id | 1712340 |
| size | 62,965 |
Andrea Princic (Princic-1837592)
documentation
README
Hooty
Hooty computes the minimum and maximum K2P distance between predetermined groups in an alignment and outputs results in a matrix format. It also includes an option for the interpretation of ambiguous bases.
Usage
Hooty takes as input a FASTA file and a text file containing a partition of species. The output is a matrix with the minimum and maximum K2P distances between the groups.
cargo install hooty
hooty <alignment.fasta> <partition.txt>
Hooty can also compute the full pairwise K2P distances between all sequences in the alignment.
hooty <alignment.fasta> <partition.txt> --full-matrix <full_matrix.csv>
Documentation
You can find the complete documentation and all the available options for Hooty here.