kbo-cli
| Crates.io | kbo-cli |
| lib.rs | kbo-cli |
| version | 0.1.0 |
| source | src |
| created_at | 2024-11-18 15:01:10.08808 |
| updated_at | 2024-11-18 15:01:10.08808 |
| description | Command-line interface to the kbo local aligner. |
| homepage | https://github.com/tmaklin/kbo-cli |
| repository | https://github.com/tmaklin/kbo-cli |
| max_upload_size | |
| id | 1452258 |
| size | 81,982 |
Tommi Mäklin (tmaklin)
documentation
README
kbo-cli
Command-line interface for the kbo local aligner.
Documentation is available at https://docs.rs/kbo.
Installation
Cargo
Run cargo install kbo-cli.
From source
Run
git clone https://github.com/tmaklin/kbo-cli
cd kbo-cli
cargo build --release
This will build the kbo executable in target/release/kbo directory.
Usage
kbo-cli provides access to two main operations:
kbo findmatches the k-mers in a query sequence with the reference and reports the local alignment segments found within the reference. Find is useful for problems that can be solved with blast.kbo mapmaps the query sequence against a reference sequence, and reports the nucleotide sequence of the alignment relative to the reference. Map solves the same problem as snippy and ska map.
For usage instructions, see the documentation at https://docs.rs/kbo.
License
kbo-cli is dual-licensed under the MIT and Apache 2.0 licenses.