Crates.io | lightmotif-transfac |
lib.rs | lightmotif-transfac |
version | 0.6.0 |
source | src |
created_at | 2023-05-03 23:58:35.818756 |
updated_at | 2023-12-13 16:28:08.833227 |
description | TRANSFAC parser implementation for the lightmotif crate. |
homepage | https://github.com/althonos/lightmotif/tree/main/lightmotif-transfac |
repository | https://github.com/althonos/lightmotif |
max_upload_size | |
id | 856087 |
size | 213,308 |
lightmotif-transfac
(β οΈ Deprecated) A TRANSFAC parser implementation for the lightmotif
crate.
π¨ The TRANSFAC parser has been merged into the lightmotif-io
crate,
use the lightmotif_io::transfac
module instead of this crate. π¨
The TRANSFAC database is a collection of transcription factors with their binding sites. It provides position-specific scoring matrices for individual transcription factors or closesly related groups.
This crate provides a parser to load TRANSFAC binding sites into lightmotif
matrices to be used with the accelerated search pipeline. See the
lightmotif
crate for more information.
Found a bug ? Have an enhancement request ? Head over to the GitHub issue tracker if you need to report or ask something. If you are filing in on a bug, please include as much information as you can about the issue, and try to recreate the same bug in a simple, easily reproducible situation.
This project adheres to Semantic Versioning and provides a changelog in the Keep a Changelog format.
This library is provided under the open-source MIT license.
This project was developed by Martin Larralde during his PhD project at the European Molecular Biology Laboratory in the Zeller team.