lightmotif-transfac

Crates.iolightmotif-transfac
lib.rslightmotif-transfac
version0.6.0
sourcesrc
created_at2023-05-03 23:58:35.818756
updated_at2023-12-13 16:28:08.833227
descriptionTRANSFAC parser implementation for the lightmotif crate.
homepagehttps://github.com/althonos/lightmotif/tree/main/lightmotif-transfac
repositoryhttps://github.com/althonos/lightmotif
max_upload_size
id856087
size213,308
Martin Larralde (althonos)

documentation

README

🎼🧬 lightmotif-transfac Star me

(⚠️ Deprecated) A TRANSFAC parser implementation for the lightmotif crate.

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🚨 The TRANSFAC parser has been merged into the lightmotif-io crate, use the lightmotif_io::transfac module instead of this crate. 🚨

πŸ—ΊοΈ Overview

The TRANSFAC database is a collection of transcription factors with their binding sites. It provides position-specific scoring matrices for individual transcription factors or closesly related groups.

This crate provides a parser to load TRANSFAC binding sites into lightmotif matrices to be used with the accelerated search pipeline. See the lightmotif crate for more information.

πŸ’­ Feedback

⚠️ Issue Tracker

Found a bug ? Have an enhancement request ? Head over to the GitHub issue tracker if you need to report or ask something. If you are filing in on a bug, please include as much information as you can about the issue, and try to recreate the same bug in a simple, easily reproducible situation.

πŸ“‹ Changelog

This project adheres to Semantic Versioning and provides a changelog in the Keep a Changelog format.

βš–οΈ License

This library is provided under the open-source MIT license.

This project was developed by Martin Larralde during his PhD project at the European Molecular Biology Laboratory in the Zeller team.

Commit count: 393

cargo fmt