lrdf
| Crates.io | lrdf |
| lib.rs | lrdf |
| version | 0.2.0 |
| source | src |
| created_at | 2023-01-17 20:03:38.86071 |
| updated_at | 2023-01-17 20:03:38.86071 |
| description | Commandline tool to generate a dataframe from Oxford Nanopore FastQ |
| homepage | |
| repository | https://github.com/ahcm/lrdf |
| max_upload_size | |
| id | 761243 |
| size | 48,535 |
Andreas Hauser (ahcm)
documentation
README
lrdf
Long Read (ONT) Data Frame
Install:
$ cargo install lrdf
Run:
$ lrdf example-ont.fastq < example-ont.fastq.lrdf.tsv
$ head 20221114_DNA_Wolf_Kemter_7plex-BC06.porechop.fastq.lrdf.tsv
seq_length mean_quality kmer_start kmer_end nt_A nt_G nt_T nt_C nt_U channels start_times
3871 32.94 ACTA AGAA 1275 767 1010 819 0 2272 2022-11-14 13:43:24 +00:00
1972 33.18 CCTG CCAA 472 395 599 506 0 1229 2022-11-14 13:43:24 +00:00
336 37.12 TTAT GGTA 92 47 131 66 0 951 2022-11-14 13:43:25 +00:00
3632 30.80 TTAT CCAC 991 849 970 822 0 1182 2022-11-14 13:43:25 +00:00
3789 23.81 GGCA AAAG 877 916 795 1201 0 1273 2022-11-14 13:43:25 +00:00
3364 32.50 AGTT AGGA 1457 591 626 690 0 2955 2022-11-14 13:43:25 +00:00
4336 28.98 GGAA TTCA 1472 713 1343 808 0 1214 2022-11-14 13:43:25 +00:00
2483 19.93 TTTT TAAC 681 543 691 568 0 1594 2022-11-14 13:43:26 +00:00
4035 28.10 TTCA GCCC 558 1705 602 1170 0 307 2022-11-14 13:43:26 +00:00