mfqe
| Crates.io | mfqe |
| lib.rs | mfqe |
| version | 0.5.0 |
| source | src |
| created_at | 2019-06-26 22:42:07.807926 |
| updated_at | 2019-11-04 00:10:41.43844 |
| description | FASTA/Q read extractor |
| homepage | https://github.com/wwood/mfqe |
| repository | https://github.com/wwood/mfqe |
| max_upload_size | |
| id | 143850 |
| size | 95,916 |
Ben J Woodcroft (wwood)
documentation
https://github.com/wwood/mfqe
README
Purpose:
extract one or more sets of reads from a FASTQ (or FASTA) file by specifying their read names.
Usage:
zcat my.fastq.gz |mfqe --fastq-read-name-lists <LIST1> .. --output-fastq-files <OUTPUT1> ..
Read name files are uncompressed text files with read names(without comments).
Output is gzip-compressed, input may or may not be.
Other FASTQ options:
--input-fastq <PATH>: Use this file as input FASTQ [default: Use STDIN]
An analogous set of options is implemented for FASTA:
--fasta-read-name-lists <LIST1> ..
--output-fasta-files <OUTPUT1> ..
--input-fasta <PATH>