mmr
| Crates.io | mmr |
| lib.rs | mmr |
| version | 0.1.6 |
| created_at | 2025-04-08 22:25:06.816445+00 |
| updated_at | 2025-07-29 18:52:05.454288+00 |
| description | Minimap2 CLI written in rust using bindings with BINSEQ and VBINSEQ support. |
| homepage | |
| repository | https://github.com/arcinstitute/mmr |
| max_upload_size | |
| id | 1626048 |
| size | 62,310 |
Noam Teyssier (noamteyssier)
documentation
README
mmr
A minimap2-based aligner with BINSEQ file format support (*.bq and *.vbq).
For converting FASTQ to BINSEQ formats see bqtools.
This uses the minimap2-rs library which facilitates raw FFI bindings to the minimap2 C library.
Installation
mmr is written in rust and deployed with cargo.
# install binary from cargo
cargo install mmr
# validate installation
mmr --version
Usage
mmr follows the same (or similar) CLI as the original minimap2 binary.
# map a *.bq file
mmr -x map-pb <library.fa> <query.bq>
# map a *.vbq file
mmr -x map-pb <library.fa> <query.vbq>
# map a *.fq file (supports compressed FASTQ as well)
mmr -x map-pb <library.fa> <query.fq>