octree

Crates.iooctree
lib.rsoctree
version0.1.0
sourcesrc
created_at2020-02-06 10:32:36.679699
updated_at2020-03-10 09:34:27.208075
descriptionOctree algorithm for nearest neighbor search in 3D space
homepagehttps://github.com/ybyygu/rust-octree
repositoryhttps://github.com/ybyygu/rust-octree
max_upload_size
id205452
size3,874,981
Wenping Guo (ybyygu)

documentation

README

This is my first crate for learning Rust.

Performance

test data: examples/data/3wu2.xyz, coordinates of 51053 particles extracted from a PDB file 3wu2 1

img

How to to reproduce

rust-octree (v0.0.6):

RAYON_NUM_THREADS=1 cargo run --example demo --release

scipy-ckdtree(v1.3.2):

ipython> edit scripts/bench.py
ipython> %timeit -n 10 run_test()

Related crates

References

Footnotes

1 https://www.rcsb.org/structure/3wu2

Commit count: 54

cargo fmt