pansam

• all rust-samtools combined into a single application specific for the long read technologies and async threaded.

cargo build

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pansam for long read pangenomics.
 ************************************************
 Gaurav Sablok,
 Email: codeprog@icloud.com
************************************************

Usage: pansam <COMMAND>

Commands:
generateid              generate ids for all the samtools id present in the samfile
generateidrange         generate ids for the specific range in the samtools file
extractor               extracts the specific ids from the samfile
viewer                  view the color coded reads for the specific region
tag-viewer              view the colour coded regions for the tags
sam-up-down-align-view  upstream and downstream regions,prankaligner and visualization of the alignments
sam-up-down-align       allows for the extraction of the upstream and downstream regions from the samfile
filter                  allows for the filtering of the samfile
filter-range            allows for the filtering of the samfile with specified range
help                    Print this message or the help of the given subcommand(s)

Options:
-h, --help     Print help
-V, --version  Print version

Gaurav Sablok
codeprog@icloud.com