phantompurger-rs

Crates.iophantompurger-rs
lib.rsphantompurger-rs
version0.1.0
sourcesrc
created_at2024-09-21 23:46:23.058355
updated_at2024-09-21 23:46:23.058355
descriptionDetecting chimeric molecules in scRNAseq
homepagehttps://github.com/redst4r/rustphantompurger
repositoryhttps://github.com/redst4r/rustphantompurger
max_upload_size
id1382578
size197,802
(redst4r)

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README

Phantompurger in Rust

A Rust version of the PhantompPurger algorithm to remove chimeric molecules from scRNAseq data.

Far from complete, in particular we're not implementing any of the statistical approaches to decide which molecules are chimeras. Rather, this crate (quickly!) creates the input tables to feed into the PhantomPurger statistical framework from bus-files (i.e. kallisto output).

Commit count: 37

cargo fmt