seqcomplexity
| Crates.io | seqcomplexity |
| lib.rs | seqcomplexity |
| version | 0.1.2 |
| created_at | 2022-04-24 16:37:52.020619+00 |
| updated_at | 2022-08-07 18:56:07.754151+00 |
| description | Calculates per-read and total sequence complexity from FastQ file. |
| homepage | https://stevenweaver.org |
| repository | https://github.com/stevenweaver/seqcomplexity |
| max_upload_size | |
| id | 573229 |
| size | 64,179 |
Steven Weaver (stevenweaver)
documentation
README
Calculates Per-Read and Total Sequence Complexity from FastQ file.
Installation
Source
Download the source code and run
cargo install
Usage
seqcomplexity -q path/to/sequence.fastq
Arguments:
| Parameter | Default | Description |
|---|---|---|
| -q --fastq | - | The path to the FASTQ file to use |
| -p, --per-read | false | Report complexity per read |