seqsplitter
| Crates.io | seqsplitter |
| lib.rs | seqsplitter |
| version | 0.1.4 |
| created_at | 2022-09-20 14:28:19.15589+00 |
| updated_at | 2022-10-03 22:32:15.358804+00 |
| description | Parses fasta records based on list of either header names or regexes |
| homepage | https://stevenweaver.org |
| repository | https://github.com/stevenweaver/seqsplitter |
| max_upload_size | |
| id | 669937 |
| size | 159,917 |
Steven Weaver (stevenweaver)
documentation
README
Parses fasta records based on list of either header names or regexes
Installation
Source
Download the source code and run
cargo install
Usage
seqsplitter -f path/to/sequence.fastq -l path/to/list.txt
Arguments:
| Parameter | Default | Description |
|---|---|---|
| -f --fasta | - | The path to the FASTQ file to use |
| -l --list | - | List of ids to parse out |
| -r --regex | false | Interpret list as regex |
| -u --assume_unique | false | Assume list is unique and exit when all seqs in list are found |
| -v --version | - | Print version information |