stats_on_gff3_ncbi
| Crates.io | stats_on_gff3_ncbi |
| lib.rs | stats_on_gff3_ncbi |
| version | 0.1.52 |
| source | src |
| created_at | 2024-02-12 15:59:59.071567 |
| updated_at | 2024-03-21 08:13:23.198461 |
| description | Calculate statistics such as CDS GC3 ratio, intron GC ratio, flanking gene region GC ratio, first intron length, number of introns, CpG ratio, etc. |
| homepage | https://gitlab.in2p3.fr/penel/stats_on_gff3/-/tree/ncbi_data?ref_type=heads |
| repository | https://gitlab.in2p3.fr/penel/stats_on_gff3/-/tree/ncbi_data?ref_type=heads |
| max_upload_size | |
| id | 1137124 |
| size | 128,317 |
Simon Penel (simonpenel)
documentation
README
Stats of gff3 files
Install :
cargo install stats_on_gff3_ncbi
Crates: https://crates.io/crates/stats_on_gff3_ncbi
Examples:
stats_on_gff3_ncbi --precision 1000 example_ncbi.gff3 example_ncbi.fa 2>err
zcat example_ncbi.fa.gz | stats_on_gff3_ncbi --precision 100 example_ncbi.gff3 stdin 2> err
For Ensembl data, see https://crates.io/crates/stats_on_gff3