virust-locator
| Crates.io | virust-locator |
| lib.rs | virust-locator |
| version | 0.1.4 |
| created_at | 2025-05-08 18:35:02.053122+00 |
| updated_at | 2025-06-11 16:49:49.069437+00 |
| description | A tool for generating sequence locators for HIV/SIV sequences, resembling the functionality of the LANL HIV-Locator tool. |
| homepage | |
| repository | https://github.com/ViralSeq/viRust-locator |
| max_upload_size | |
| id | 1665695 |
| size | 96,023 |
Shuntai Zhou (ViralSeq)
documentation
https://docs.rs/virust-locator
README
viRust-Locator
A simplified version of LANL HIV Database HIV Locator tool
Usage
Usage: cargo run -- [OPTIONS] --query
Options:
-q, --query Query sequence
-r, --reference Reference genome, either HXB2 or SIVmm239 [default: HXB2]
-t, --type-query <TYPE_QUERY> Type of query, either nt or aa [default: nt]
-a, --algorithm algorithm for locator, 1 is accurate but slower, 2 is fast but less accurate, suitable for smaller query sequences [default: 1]
-h, --help Print help
-V, --version Print version
License
The package is available as open source under the terms of the MIT License.
Code of Conduct
Everyone interacting in the VirustLocator project's codebases, issue trackers, chat rooms and mailing lists is expected to follow the code of conduct.